Unnecessary roughness? Testing the hypothesis that predators destined for molecular gut-content analysis must be hand-collected to avoid cross-contamination.
نویسندگان
چکیده
Molecular gut-content analysis enables detection of arthropod predation with minimal disruption of ecosystem processes. Mass-collection methods, such as sweep-netting, vacuum sampling and foliage beating, could lead to regurgitation or rupturing of predators along with uneaten prey, thereby contaminating specimens and compromising resultant gut-content data. Proponents of this 'cross-contamination hypothesis' advocate hand-collection as the best way to avoid cross-contamination. However, hand-collection is inefficient when large samples are needed, as with most ecological research. We tested the cross-contamination hypothesis by setting out onto potato plants immature Coleomegilla maculata and Podisus maculiventris that had been fed larvae of either Leptinotarsa decemlineata or Leptinotarsa juncta, or unfed individuals of these predator species along with L. decemlineata larvae. The animals were then immediately re-collected, either by knocking them vigorously off the plants onto a beat cloth and capturing them en masse with an aspirator ('rough' treatment) or by hand-searching and collection with a brush ('best practice'). Collected predators were transferred in the field to individual vials of chilled ethanol and subsequently assayed by PCR for fragments of cytochrome oxidase I of L. decemlineata and L. juncta. Ten to 39 per cent of re-collected fed predators tested positive by PCR for DNA of both Leptinotarsa species, and 14-38% of re-collected unfed predators contained L. decemlineata DNA. Overall levels of cross-contamination in the rough (31%) and best-practice (11%) samples were statistically different and supported the cross-contamination hypothesis. A pilot study on eliminating external DNA contamination with bleach prior to DNA extraction and amplification gave promising results.
منابع مشابه
Why COVID-19 Laboratory Personnel Should Be Tested Before Attending the Laboratory: how even the most experienced personnel conta350minate clinical samples
Dear Editor in Chief Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has resulted in a pandemic (1). Early diagnosis and testing of symptomatic individuals and asymptomatic carriers (2) remain essential since the latter group can transmit the virus (3,4). Current assays for SARS-CoV-2 detection are mostly based on quantitative real-time PCR (RT-qPCR)(5). However, cross-contaminat...
متن کاملSuction sampling as a significant source of error in molecular analysis of predator diets.
The molecular detection of predation is a fast growing field, allowing highly specific and sensitive detection of prey DNA within the gut contents or faeces of a predator. Like all molecular methods, this technique is prone to potential sources of error that can result in both false positive and false negative results. Here, we test the hypothesis that the use of suction samplers to collect pre...
متن کاملEvaluation of Bacterial Contamination in Clinical Environment of Sari Dental School in 2018
Background and Aim: Bacterial contamination of clinical surfaces of dental units that have been touched or been exposed to patients’ blood or saliva can be a reservoir for infections, leading to cross-contamination. This study aimed to evaluate bacterial contamination in the clinical environment of Sari Dental School in 2018. Materials and Methods: In this cross-sectional (descriptive-analytic...
متن کاملHumpty Dumpty domination on correlational data analysis in social welfare researches
Introduction Identifying and correct errors is essential to science, so propose the maxim that science is self correcting. While the err is humain is accepted reflected in philosophy of science especially in giving rise to the maxim that scientific hypothesis must have the chance to falsify. In the current paper, the author point to errors in correlational studies, that occure because of misus...
متن کاملRoughness Model for Adhesion Testing of Pharmaceutical Coating Materials
Objective Roughness is the main parameter in interlocking bonding mechanism. Yet there is no model designed to evaluate the effect of surface roughness on adhesion of coating materials in pharmaceutical sciences. Materials and Methods In this study polymethyl metacrylate spherical beads with different sizes were poured into 10 mm mold, then it was pressed by hand screw and finally heated to 141...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Molecular ecology resources
دوره 11 2 شماره
صفحات -
تاریخ انتشار 2011